As per requested...
(This is an excerpt from the book "Appreciating Navadvipa Dhama" by HH Mahanidhi Swami)
The following popular story explains the appearance of the mridanga in Gaura-lilä: Before coming to this world as the Golden Avatära, Lord Krsna said to His flute, “My dear flute, I am descending again to the material world but not in this form. You should stay here with Rädharani to pacify Her. I promised Rädhä that I would not take you with Me.”
On hearing this, the flute began to cry and said, “My dear Lord Krsna, how can You leave me here alone. I have always been by Your side, but now You are neglecting me. What have I done to deserve this?”
Krsnaa replied compassionately that He would bring him along but in a different form. The flute did not mind changing his form, as long as he could remain engaged in Krsna’s personal service. In this way the flute transformed into a mridanga, and descended to this world with Sri Caitanya Mahäprabhu.
ASA - Uncle Gismo: Hmmmm! Popular story. Not very scientific. (But cute... :O}) Lord Caitany doesn't play Kartals of Mrdanga in His lila. Rama has a bow, Krsna has his flute. Hmmm... Thank you for the news. We have some more ideas to send.... Soon!